DPTF: a database of poplar transcription factors.
Identifieur interne : 003C16 ( Main/Exploration ); précédent : 003C15; suivant : 003C17DPTF: a database of poplar transcription factors.
Auteurs : Qi-Hui Zhu [République populaire de Chine] ; An-Yuan Guo ; Ge Gao ; Ying-Fu Zhong ; Meng Xu ; Minren Huang ; Jinchu LuoSource :
- Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2007.
Descripteurs français
- KwdFr :
- MESH :
- composition chimique : Populus.
- génétique : Populus.
- Bases de données de protéines, Facteurs de transcription, Internet, Protéines végétales, Transcription génétique.
English descriptors
- KwdEn :
- MESH :
- chemical : Plant Proteins, Transcription Factors.
- chemistry : Populus.
- genetics : Populus.
- Databases, Protein, Internet, Transcription, Genetic.
Abstract
The database of poplar transcription factors (DPTF) is a plant transcription factor (TF) database containing 2576 putative poplar TFs distributed in 64 families. These TFs were identified from both computational prediction and manual curation. We have provided extensive annotations including sequence features, functional domains, GO assignment and expression evidence for all TFs. In addition, DPTF contains cross-links to the Arabidopsis and rice transcription factor databases making it a unique resource for genome-scale comparative studies of transcriptional regulation in model plants. Availiability: DPTF is available at http://dptf.cbi.pku.edu.cn.
DOI: 10.1093/bioinformatics/btm113
PubMed: 17392330
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">DPTF: a database of poplar transcription factors.</title><author><name sortKey="Zhu, Qi Hui" sort="Zhu, Qi Hui" uniqKey="Zhu Q" first="Qi-Hui" last="Zhu">Qi-Hui Zhu</name><affiliation wicri:level="4"><nlm:affiliation>Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering and College of Life Sciences, Peking University, Beijing 100871, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering and College of Life Sciences, Peking University, Beijing 100871</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName><orgName type="university">Université de Pékin</orgName><placeName><settlement type="city">Pékin</settlement><region type="capitale">Pékin</region></placeName></affiliation></author><author><name sortKey="Guo, An Yuan" sort="Guo, An Yuan" uniqKey="Guo A" first="An-Yuan" last="Guo">An-Yuan Guo</name></author><author><name sortKey="Gao, Ge" sort="Gao, Ge" uniqKey="Gao G" first="Ge" last="Gao">Ge Gao</name></author><author><name sortKey="Zhong, Ying Fu" sort="Zhong, Ying Fu" uniqKey="Zhong Y" first="Ying-Fu" last="Zhong">Ying-Fu Zhong</name></author><author><name sortKey="Xu, Meng" sort="Xu, Meng" uniqKey="Xu M" first="Meng" last="Xu">Meng Xu</name></author><author><name sortKey="Huang, Minren" sort="Huang, Minren" uniqKey="Huang M" first="Minren" last="Huang">Minren Huang</name></author><author><name sortKey="Luo, Jinchu" sort="Luo, Jinchu" uniqKey="Luo J" first="Jinchu" last="Luo">Jinchu Luo</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2007">2007</date><idno type="RBID">pubmed:17392330</idno><idno type="pmid">17392330</idno><idno type="doi">10.1093/bioinformatics/btm113</idno><idno type="wicri:Area/Main/Corpus">003B98</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003B98</idno><idno type="wicri:Area/Main/Curation">003B98</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003B98</idno><idno type="wicri:Area/Main/Exploration">003B98</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">DPTF: a database of poplar transcription factors.</title><author><name sortKey="Zhu, Qi Hui" sort="Zhu, Qi Hui" uniqKey="Zhu Q" first="Qi-Hui" last="Zhu">Qi-Hui Zhu</name><affiliation wicri:level="4"><nlm:affiliation>Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering and College of Life Sciences, Peking University, Beijing 100871, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering and College of Life Sciences, Peking University, Beijing 100871</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName><orgName type="university">Université de Pékin</orgName><placeName><settlement type="city">Pékin</settlement><region type="capitale">Pékin</region></placeName></affiliation></author><author><name sortKey="Guo, An Yuan" sort="Guo, An Yuan" uniqKey="Guo A" first="An-Yuan" last="Guo">An-Yuan Guo</name></author><author><name sortKey="Gao, Ge" sort="Gao, Ge" uniqKey="Gao G" first="Ge" last="Gao">Ge Gao</name></author><author><name sortKey="Zhong, Ying Fu" sort="Zhong, Ying Fu" uniqKey="Zhong Y" first="Ying-Fu" last="Zhong">Ying-Fu Zhong</name></author><author><name sortKey="Xu, Meng" sort="Xu, Meng" uniqKey="Xu M" first="Meng" last="Xu">Meng Xu</name></author><author><name sortKey="Huang, Minren" sort="Huang, Minren" uniqKey="Huang M" first="Minren" last="Huang">Minren Huang</name></author><author><name sortKey="Luo, Jinchu" sort="Luo, Jinchu" uniqKey="Luo J" first="Jinchu" last="Luo">Jinchu Luo</name></author></analytic><series><title level="j">Bioinformatics (Oxford, England)</title><idno type="eISSN">1367-4811</idno><imprint><date when="2007" type="published">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Databases, Protein (MeSH)</term><term>Internet (MeSH)</term><term>Plant Proteins (MeSH)</term><term>Populus (chemistry)</term><term>Populus (genetics)</term><term>Transcription Factors (MeSH)</term><term>Transcription, Genetic (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données de protéines (MeSH)</term><term>Facteurs de transcription (MeSH)</term><term>Internet (MeSH)</term><term>Populus (composition chimique)</term><term>Populus (génétique)</term><term>Protéines végétales (MeSH)</term><term>Transcription génétique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Protein</term><term>Internet</term><term>Transcription, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données de protéines</term><term>Facteurs de transcription</term><term>Internet</term><term>Protéines végétales</term><term>Transcription génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The database of poplar transcription factors (DPTF) is a plant transcription factor (TF) database containing 2576 putative poplar TFs distributed in 64 families. These TFs were identified from both computational prediction and manual curation. We have provided extensive annotations including sequence features, functional domains, GO assignment and expression evidence for all TFs. In addition, DPTF contains cross-links to the Arabidopsis and rice transcription factor databases making it a unique resource for genome-scale comparative studies of transcriptional regulation in model plants. Availiability: DPTF is available at http://dptf.cbi.pku.edu.cn.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17392330</PMID><DateCompleted><Year>2007</Year><Month>09</Month><Day>17</Day></DateCompleted><DateRevised><Year>2009</Year><Month>11</Month><Day>04</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1367-4811</ISSN><JournalIssue CitedMedium="Internet"><Volume>23</Volume><Issue>10</Issue><PubDate><Year>2007</Year><Month>May</Month><Day>15</Day></PubDate></JournalIssue><Title>Bioinformatics (Oxford, England)</Title><ISOAbbreviation>Bioinformatics</ISOAbbreviation></Journal><ArticleTitle>DPTF: a database of poplar transcription factors.</ArticleTitle><Pagination><MedlinePgn>1307-8</MedlinePgn></Pagination><Abstract><AbstractText>The database of poplar transcription factors (DPTF) is a plant transcription factor (TF) database containing 2576 putative poplar TFs distributed in 64 families. These TFs were identified from both computational prediction and manual curation. We have provided extensive annotations including sequence features, functional domains, GO assignment and expression evidence for all TFs. In addition, DPTF contains cross-links to the Arabidopsis and rice transcription factor databases making it a unique resource for genome-scale comparative studies of transcriptional regulation in model plants. Availiability: DPTF is available at http://dptf.cbi.pku.edu.cn.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Qi-Hui</ForeName><Initials>QH</Initials><AffiliationInfo><Affiliation>Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering and College of Life Sciences, Peking University, Beijing 100871, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>An-Yuan</ForeName><Initials>AY</Initials></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Ge</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Zhong</LastName><ForeName>Ying-Fu</ForeName><Initials>YF</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Meng</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Minren</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Jinchu</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2007</Year><Month>03</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Bioinformatics</MedlineTA><NlmUniqueID>9808944</NlmUniqueID><ISSNLinking>1367-4803</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D030562" MajorTopicYN="Y">Databases, Protein</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020407" MajorTopicYN="N">Internet</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="Y">Plant Proteins</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="Y">Transcription Factors</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014158" MajorTopicYN="N">Transcription, Genetic</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2007</Year><Month>3</Month><Day>30</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2007</Year><Month>9</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2007</Year><Month>3</Month><Day>30</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">17392330</ArticleId><ArticleId IdType="pii">btm113</ArticleId><ArticleId IdType="doi">10.1093/bioinformatics/btm113</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Pékin</li></region><settlement><li>Pékin</li></settlement><orgName><li>Université de Pékin</li></orgName></list><tree><noCountry><name sortKey="Gao, Ge" sort="Gao, Ge" uniqKey="Gao G" first="Ge" last="Gao">Ge Gao</name><name sortKey="Guo, An Yuan" sort="Guo, An Yuan" uniqKey="Guo A" first="An-Yuan" last="Guo">An-Yuan Guo</name><name sortKey="Huang, Minren" sort="Huang, Minren" uniqKey="Huang M" first="Minren" last="Huang">Minren Huang</name><name sortKey="Luo, Jinchu" sort="Luo, Jinchu" uniqKey="Luo J" first="Jinchu" last="Luo">Jinchu Luo</name><name sortKey="Xu, Meng" sort="Xu, Meng" uniqKey="Xu M" first="Meng" last="Xu">Meng Xu</name><name sortKey="Zhong, Ying Fu" sort="Zhong, Ying Fu" uniqKey="Zhong Y" first="Ying-Fu" last="Zhong">Ying-Fu Zhong</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Zhu, Qi Hui" sort="Zhu, Qi Hui" uniqKey="Zhu Q" first="Qi-Hui" last="Zhu">Qi-Hui Zhu</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003C16 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 003C16 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:17392330
|texte= DPTF: a database of poplar transcription factors.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:17392330" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |